Basic Information
Locus ID:
gene-BS78_08G053400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7785854 | 7790174 | - | gene-BS78_08G053400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 102,741.13 Da | 36.67 | 97.70 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 204 | 262 | 2.6E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 415 | 473 | 3.5E-9 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 635 | 924 | 8.9E-41 | IPR001245 |
| SUPERFAMILY | SSF52075 | Outer arm dynein light chain 1 | 86 | 219 | 4.97E-18 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 204 | 508 | 5.44E-53 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 624 | 925 | 1.08E-70 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 296 | 529 | 2.4E-61 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 604 | 717 | 1.0E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 203 | 1.7E-26 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 718 | 940 | 1.2E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 204 | 295 | 4.3E-23 | IPR032675 |
| SMART | SM00220 | serkin_6 | 634 | 926 | 9.2E-22 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 486 | 509 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 179 | 203 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 413 | 437 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 103 | 126 | 0.14 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 249 | 273 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 438 | 462 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 225 | 248 | 100.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 634 | 933 | 34.98661 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 133 | 155 | 7.796663 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 105 | 126 | 7.511737 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 640 | 667 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 777 | 789 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 228 | 241 | 3.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 462 | 475 | 3.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_039798584.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 [Panicum virgatum] | 0 |
| Q9FGL5 | Receptor protein-tyrosine kinase CEPR1 OS=Arabidopsis thaliana OX=3702 GN=CEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RIW1 | Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS53633 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology