Basic Information
Locus ID:
gene-BS78_08G049500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7182131 | 7185894 | + | gene-BS78_08G049500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 91,215.91 Da | 53.15 | 64.17 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 553 | 5.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 448 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 558 | 595 | 8.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 410 | 733 | 2.2E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 509 | 749 | 7.9E-46 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 390 | 465 | 2.0E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 597 | 636 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 449 | 5.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 688 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 595 | 3.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 553 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 689 | 730 | 0.51 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 596 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 522 | 562 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 596 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 417 | 450 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 450 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 522 | 556 | 11.207411 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 540 | 554 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 436 | 450 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 582 | 596 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 540 | 554 | 1.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 500 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_022683809.1 | WD repeat-containing protein 44 [Setaria italica] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368S2D0 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_7G283800v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology