Basic Information
Locus ID:
gene-BS78_08G046200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6562996 | 6591452 | + | gene-BS78_08G046200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 204,009.66 Da | 47.84 | 91.80 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 366 | 513 | 0.00122668 | - |
| Pfam | PF00069 | Protein kinase domain | 18 | 299 | 3.8E-50 | IPR000719 |
| Pfam | PF00931 | NB-ARC domain | 370 | 585 | 2.6E-35 | IPR002182 |
| SUPERFAMILY | SSF52047 | RNI-like | 1339 | 1621 | 7.85E-42 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 738 | 1003 | 3.16E-43 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 353 | 625 | 1.24E-47 | IPR027417 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 322 | 1.34E-68 | IPR011009 |
| Gene3D | G3DSA:3.40.50.300 | - | 353 | 520 | 4.2E-30 | IPR027417 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 94 | 4.0E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 901 | 1194 | 3.4E-22 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 112 | 324 | 9.2E-49 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 606 | 707 | 4.4E-6 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 734 | 900 | 4.5E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1497 | 1630 | 6.8E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1338 | 1496 | 5.8E-30 | IPR032675 |
| SMART | SM00220 | serkin_6 | 18 | 305 | 2.5E-32 | IPR000719 |
| SMART | SM00367 | LRR_CC_2 | 1495 | 1522 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 886 | 914 | 61.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1447 | 1474 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1567 | 1600 | 65.0 | IPR006553 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 18 | 305 | 35.283424 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 156 | 168 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 24 | 47 | - | IPR017441 |
| PRINTS | PR00364 | Disease resistance protein signature | 558 | 572 | 6.4E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 389 | 404 | 6.4E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 461 | 475 | 6.4E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 963 | 979 | 6.4E-14 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1213 | 1232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1213 | 1233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1671 | 1729 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11330.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_008670938.1 | uncharacterized protein LOC103648229 isoform X1 [Zea mays] | 0 |
| Q7XA42 | Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1D6F8T3 | Disease resistance protein RGA2 OS=Zea mays OX=4577 GN=103648229 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology