Basic Information
Locus ID:
gene-BS78_08G032900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3594069 | 3598483 | + | gene-BS78_08G032900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 94,957.05 Da | 49.81 | 71.25 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 635 | 788 | 2.61616E-31 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 636 | 780 | 2.8E-21 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 614 | 800 | 7.53E-36 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 599 | 866 | 3.6E-70 | IPR016135 |
| SMART | SM00212 | ubc_7 | 635 | 793 | 6.4E-17 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 632 | 793 | 34.198318 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 527 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16920.1 | ubiquitin-conjugating enzyme 23. | 0 |
| RefSeq | XP_034585217.1 | probable ubiquitin-conjugating enzyme E2 23 [Setaria viridis] | 0 |
| Q9ZVX1 | Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VGN7 | Putative ubiquitin-conjugating enzyme E2 24 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 15 | AH05.1035, BH05.1090, BH05.3569, BH05.3573, BH05.3575 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0399110, gene-QOZ80_5AG0399230 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_014680, gene-QYE76_032195, gene-QYE76_061273 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G032900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G009630 |