Basic Information
Locus ID:
gene-BS78_08G013100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase galacturonan-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1551787 | 1554196 | - | gene-BS78_08G013100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 79,101.21 Da | 37.11 | 90.69 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 338 | 381 | 9.85091E-6 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 448 | 711 | 1.2E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 447 | 713 | 6.29E-68 | IPR011009 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 335 | 382 | 3.91E-5 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 341 | 384 | 1.5E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 522 | 719 | 6.8E-52 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 297 | 340 | 7.1E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 430 | 521 | 2.6E-21 | - |
| SMART | SM00220 | serkin_6 | 447 | 712 | 8.2E-29 | IPR000719 |
| SMART | SM00179 | egfca_6 | 338 | 381 | 4.2E-8 | IPR001881 |
| SMART | SM00181 | egf_5 | 341 | 381 | 1.3E-4 | IPR000742 |
| SMART | SM00181 | egf_5 | 290 | 337 | 52.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 447 | 712 | 35.650906 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 338 | 381 | 11.409135 | IPR000742 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 453 | 475 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 566 | 578 | - | IPR008271 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 338 | 365 | - | IPR018097 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 356 | 367 | - | IPR000152 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_039797423.1 | wall-associated receptor kinase 3-like [Panicum virgatum] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T7ELM0 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G052700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology