Basic Information
Locus ID:
gene-BS78_08G013000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1537821 | 1546521 | + | gene-BS78_08G013000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 71,760.45 Da | 38.24 | 95.10 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 347 | 390 | 1.36784E-5 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 46 | 77 | 2.1E-7 | IPR025287 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 437 | 588 | 3.2E-23 | IPR001245 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 345 | 392 | 5.59E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 428 | 647 | 2.19E-41 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 417 | 654 | 2.5E-39 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 306 | 390 | 2.9E-11 | - |
| SMART | SM00220 | serkin_6 | 434 | 648 | 9.4E-10 | IPR000719 |
| SMART | SM00179 | egfca_6 | 347 | 390 | 2.5E-8 | IPR001881 |
| SMART | SM00181 | egf_5 | 350 | 390 | 1.4E-4 | IPR000742 |
| SMART | SM00181 | egf_5 | 299 | 346 | 85.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 434 | 655 | 22.26601 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 347 | 390 | 11.041014 | IPR000742 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 365 | 376 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 347 | 374 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 553 | 565 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_034582768.1 | wall-associated receptor kinase 4-like isoform X2 [Setaria viridis] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6VSP1 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G065600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology