Basic Information
Locus ID:
gene-BS78_08G008800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1146293 | 1155870 | + | gene-BS78_08G008800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 62,243.01 Da | 31.66 | 84.22 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 437 | 566 | 1.18727E-29 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 449 | 566 | 8.5E-16 | IPR001229 |
| Pfam | PF00069 | Protein kinase domain | 19 | 300 | 1.1E-44 | IPR000719 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 412 | 566 | 1.96E-29 | IPR036404 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 319 | 6.07E-61 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 87 | 9.1E-18 | - |
| Gene3D | G3DSA:2.100.10.30 | - | 405 | 566 | 6.0E-33 | IPR036404 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 110 | 320 | 9.7E-45 | - |
| SMART | SM00915 | Jacalin_2 | 425 | 566 | 2.4E-5 | IPR001229 |
| SMART | SM00220 | serkin_6 | 18 | 303 | 3.2E-30 | IPR000719 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 414 | 567 | 25.19985 | IPR001229 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 18 | 313 | 34.604992 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 24 | 45 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 154 | 166 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 348 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24080.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_044450541.1 | putative proline-rich receptor-like protein kinase PERK6 isoform X1 [Triticum aestivum] | 0 |
| Q9FLV4 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana OX=3702 GN=At5g24080 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5ZY30 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G159300, gene-BS78_08G008800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501084, Pt_Chr0501097 |