Basic Information
Locus ID:
gene-BS78_07G226100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein of unknown function (DUF 659)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 42258932 | 42263252 | - | gene-BS78_07G226100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 66,541.07 Da | 41.61 | 66.80 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02892 | BED zinc finger | 5 | 40 | 1.2E-4 | IPR003656 |
| Pfam | PF04937 | Protein of unknown function (DUF 659) | 233 | 384 | 1.7E-51 | IPR007021 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 255 | 552 | 9.1E-32 | IPR012337 |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 1 | 54 | 9.343023 | IPR003656 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 139 | - | - |
| Coils | Coil | Coil | 87 | 118 | - | - |
| Coils | Coil | Coil | 240 | 260 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13020.1 | hAT transposon superfamily protein. | 0 |
| RefSeq | XP_039780798.1 | uncharacterized protein LOC120648106 [Panicum virgatum] | 0 |
| TrEMBL | A0A1D6NFR1 | Uncharacterized protein (Fragment) OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d043852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_048311, gene-QYE76_055843 |
| Poaceae | Paspalum vaginatum | 15 | gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... |