Basic Information
Locus ID:
gene-BS78_07G220600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 41845173 | 41846673 | + | gene-BS78_07G220600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 49,267.73 Da | 49.50 | 73.04 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 41 | 76 | 5.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 95 | 8.37E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 36 | 95 | 5.2E-8 | - |
| SMART | SM00256 | fbox_2 | 42 | 82 | 0.0025 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 36 | 81 | 9.206031 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 43 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64295.1 | F-box associated ubiquitination effector family protein. | 0 |
| RefSeq | XP_004974906.2 | F-box protein At5g49610 [Setaria italica] | 0 |
| Q6NLE0 | F-box protein At5g41720 OS=Arabidopsis thaliana OX=3702 GN=At5g41720 PE=2 SV=1 | 0 | |
| TrEMBL | K3YL91 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=101780599 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4490, jg7807 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G009340, COCNU_08G009350 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103724068, gene-LOC103724275 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G12738, Ftri15G14062 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64290.1, AT1G64295.1, AT2G05360.1, AT5G41720.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10023822m.g.v1.0, Thhalv10028201m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g34730.v2.2, Sp1g34780.v2.2, Sp1g34880.v2.2 ... |
| Brassicaceae | Brassica nigra | 3 | BniB01g024520.2N, BniB04g022710.2N, BniB04g023390.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0136 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1738, evm.TU.LG07.1295, evm.TU.LG12.549 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00015563, Pov_00024609, Pov_00024610, Pov_00024634 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2298, BH08.2438, CH08.2634 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2BG0159840, gene-QOZ80_8AG0639930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0687530.1 |
| Poaceae | Oryza coarctata | 1 | Oco16G013360 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g43530.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_07G220300, gene-BS78_07G220500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403445 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr29G002480 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G490500, Tel7E01G469900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG035740, gene_TRIDC7BG026880 |
| Poaceae | Triticum aestivum | 4 | TraesCS4A02G009900.1, TraesCS7A02G271900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb202740_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17612 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24492, Zma_g24493 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613379, gene-LOC132618290, gene-LOC132624671 |
| Solanaceae | Solanum chilense | 1 | SOLCI003616000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025307 |