Basic Information
Locus ID:
gene-BS78_07G210500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 40923840 | 40930552 | + | gene-BS78_07G210500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 67,048.30 Da | 50.24 | 60.39 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 212 | 273 | 1.3E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 290 | 338 | 5.6E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 212 | 280 | 2.3E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 292 | 340 | 1.0E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 221 | 4.24E-18 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 566 | 594 | 1.29E-6 | IPR036443 |
| Gene3D | G3DSA:1.20.120.1750 | - | 269 | 532 | 3.6E-88 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 226 | 7.2E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 563 | 595 | 2.1E-7 | - |
| SMART | SM00647 | ibrneu5 | 212 | 273 | 1.0E-21 | IPR002867 |
| SMART | SM00547 | zf_4 | 569 | 593 | 0.002 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 286 | 347 | 0.054 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 189 | 9.081335 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 139 | 351 | 48.024269 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 567 | 595 | 8.061142 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 571 | 590 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 549 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_025820234.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum hallii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3I4E1 | RBR-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_6G288000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology