Basic Information
Locus ID:
gene-BS78_07G208900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 40779350 | 40788610 | + | gene-BS78_07G208900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 45,751.24 Da | 60.66 | 54.86 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 23 | 66 | 2.00378E-8 | - |
| Pfam | PF13639 | Ring finger domain | 22 | 66 | 7.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 68 | 1.32E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 70 | 4.0E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 23 | 65 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 23 | 66 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 424 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05545.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039814846.1 | E3 ubiquitin-protein ligase RFI2-like [Panicum virgatum] | 0 |
| Q5Z8R1 | E3 ubiquitin-protein ligase IPI1 OS=Oryza sativa subsp. japonica OX=39947 GN=IPI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0R4W6 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6NG336100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | scaffold000125G000020, scaffold000125G000030 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705956, gene-LOC103715364 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.361.V1.1 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2226, BH08.2355, CH08.2530 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638330, gene-QOZ80_8BG0667600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0685620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030368 |
| Poaceae | Oryza coarctata | 4 | Oco15G009600, Oco16G012820, Oco17G009120, Oco18G009200 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g42640.1, LOC_Os09g33670.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G208900, gene-BS78_K272500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403540 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G018230, Chr17G017450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G464300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG035110, gene_TRIDC7BG025840 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G268500.1, TraesCS7B02G163800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb037170_P001, Zm00001eb198260_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42747 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23351 |