Basic Information
Locus ID:
gene-BS78_07G202300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 40186290 | 40212814 | - | gene-BS78_07G202300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 98,221.24 Da | 52.42 | 75.05 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 685 | 717 | 0.03 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 539 | 570 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 845 | 880 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 502 | 881 | 9.42E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 500 | 895 | 2.5E-56 | IPR015943 |
| SMART | SM00320 | WD40_4 | 532 | 570 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 795 | 838 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 720 | 760 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 842 | 881 | 8.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 573 | 622 | 0.96 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 717 | 1.8E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 685 | 720 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 849 | 890 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 685 | 726 | 10.642123 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 825 | 839 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034599667.1 | uncharacterized protein LOC117860475 [Setaria viridis] | 0 |
| P18851 | Guanine nucleotide-binding protein subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=STE4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4V6D5Q4 | WD_REPEATS_REGION domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G230100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25762 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19832 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001817 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31930, Sbi_jg57574, Sbi_jg57577 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25257 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl54180, Sgl59487, Sgl59522 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004772, gene:ENSEOMG00000021711 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0016780, CQ.Regalona.r1.5BG0018080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30028280 |
| Apiaceae | Apium graveolens | 1 | Ag9G00541 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G003160, COCNU_11G003170 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707865, gene-LOC120104671, gene-LOC120111431 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1455.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G20988 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G50410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014456m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g12560.v2.2, SpUn0015_0080.v2.2, SpUn0039_0020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g060720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2048 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2227, Cgl01G2248 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g03970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1078 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028946 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27261 |
| Poaceae | Echinochloa crus-galli | 2 | BH08.2297, CH08.2474 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638950, gene-QOZ80_8BG0666890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0683950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030257 |
| Poaceae | Oryza coarctata | 2 | Oco15G010050, Oco16G012430 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g41900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G202300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306494, Pt_Chr0405814 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G017780, Chr17G017080, Chr20G001220, Chr29G001550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G457300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG024980 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G260200.1, TraesCS7B02G158200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb175120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17511 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24427 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2269, evm.TU.LG07.2157 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g12510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.360 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29011 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-88 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1951 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.230 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000836 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14681 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1360 |
| Salicaceae | Populus euphratica | 2 | populus_peu28850, populus_peu30256 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632618 |
| Solanaceae | Solanum chilense | 1 | SOLCI007106100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012157 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2625 |