Basic Information
Locus ID:
gene-BS78_07G200200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 40078392 | 40084403 | - | gene-BS78_07G200200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 113,623.54 Da | 49.94 | 71.74 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 94 | 152 | 4.9E-6 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 195 | 254 | 1.6E-6 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 437 | 1025 | 6.4E-37 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 350 | 417 | 1.0E-7 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 253 | 2.24E-9 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 436 | 1027 | 2.94E-68 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 324 | 417 | 1.53E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 61 | 154 | 5.06E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 420 | 8.9E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 265 | 1.1E-9 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 421 | 618 | 1.1E-29 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 757 | 1030 | 1.6E-36 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 156 | 1.1E-8 | IPR013083 |
| SMART | SM00290 | Zf_UBP_1 | 197 | 242 | 0.52 | IPR001607 |
| SMART | SM00290 | Zf_UBP_1 | 349 | 407 | 0.03 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 436 | 1028 | 39.01606 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 348 | 419 | 12.543169 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 73 | 152 | 11.83268 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 193 | 254 | 13.169743 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 437 | 452 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 959 | 977 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 780 | 821 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025822717.1 | ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 [Panicum hallii] | 0 |
| Q4R6X7 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca fascicularis OX=9541 GN=USP16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T8IHU9 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum hallii OX=206008 GN=PAHAL_6G274600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology