Basic Information
Locus ID:
gene-BS78_07G200000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 40050341 | 40055171 | - | gene-BS78_07G200000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 116,665.45 Da | 45.76 | 74.10 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 478 | 1050 | 1.9E-37 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 182 | 241 | 3.5E-7 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 82 | 139 | 4.3E-7 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 350 | 419 | 3.7E-11 | IPR001607 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 477 | 1052 | 1.24E-65 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 141 | 2.83E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 420 | 8.71E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 240 | 2.83E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 250 | 2.3E-11 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 472 | 775 | 5.7E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 320 | 435 | 3.4E-13 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 776 | 1055 | 1.6E-33 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 149 | 3.0E-10 | IPR013083 |
| SMART | SM00290 | Zf_UBP_1 | 181 | 229 | 0.2 | IPR001607 |
| SMART | SM00290 | Zf_UBP_1 | 349 | 408 | 0.039 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 180 | 241 | 12.778133 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 477 | 1053 | 36.598446 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 348 | 420 | 14.439671 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 60 | 139 | 11.771143 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 983 | 1002 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 811 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_025822717.1 | ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 [Panicum hallii] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T8IHU9 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum hallii OX=206008 GN=PAHAL_6G274600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology