Basic Information
Locus ID:
gene-BS78_07G181800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 38662018 | 38668380 | + | gene-BS78_07G181800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 84,019.38 Da | 39.31 | 86.43 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 58 | 356 | 2.53412E-172 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 373 | 675 | 4.12935E-154 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 91 | 183 | 1.6E-5 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 378 | 671 | 1.1E-31 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 372 | 676 | 7.06E-49 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 57 | 356 | 1.88E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 56 | 357 | 1.5E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 371 | 676 | 8.3E-46 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 373 | 676 | 29.481712 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 58 | 357 | 29.993279 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_034599849.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X2 [Setaria viridis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6U9Q7 | glycerophosphodiester phosphodiesterase OS=Setaria viridis OX=4556 GN=SEVIR_6G209900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology