Basic Information
Locus ID:
gene-BS78_07G167300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 37478599 | 37486521 | - | gene-BS78_07G167300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 109,188.38 Da | 56.20 | 62.67 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 467 | 769 | 5.77964E-129 | - |
| Pfam | PF01753 | MYND finger | 122 | 159 | 9.9E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 466 | 768 | 3.2E-46 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 119 | 161 | 5.93E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 462 | 773 | 2.55E-87 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 459 | 782 | 9.5E-93 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 114 | 163 | 2.0E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 122 | 159 | 11.594026 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 466 | 771 | 52.119804 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 467 | 482 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 122 | 159 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 978 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 952 | 978 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 830 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 236 | - | - |
| Coils | Coil | Coil | 45 | 65 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034600057.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Setaria viridis] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811PI32 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS29834 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology