Basic Information
Locus ID:
gene-BS78_07G125400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 28313665 | 28370732 | + | gene-BS78_07G125400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 63,651.77 Da | 26.14 | 104.32 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 435 | 531 | 4.38393E-29 | - |
| CDD | cd00030 | C2 | 264 | 366 | 7.69915E-26 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 249 | 1.6E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 8.3E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 433 | 528 | 4.7E-27 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 429 | 552 | 3.7E-34 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 392 | 3.7E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 399 | 3.4E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 412 | 551 | 1.1E-36 | IPR035892 |
| SMART | SM00239 | C2_3c | 434 | 532 | 2.8E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 363 | 2.6E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 240 | 364 | 20.641041 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 415 | 533 | 22.217617 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 29.451704 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 450 | 462 | 2.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 476 | 489 | 2.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 498 | 506 | 2.1E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_002461108.1 | synaptotagmin-5 [Sorghum bicolor] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | B4F9J2 | Lipid binding protein OS=Zea mays OX=4577 GN=100191632 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology