Basic Information
Locus ID:
gene-BS78_07G114500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 20965917 | 20972111 | - | gene-BS78_07G114500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 35,222.16 Da | 47.67 | 91.84 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 54 | 105 | 4.80223E-21 | - |
| Pfam | PF12906 | RING-variant domain | 54 | 104 | 2.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 109 | 2.0E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 118 | 5.7E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 53 | 105 | 7.7E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 46 | 111 | 21.81163 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_002466564.1 | uncharacterized protein LOC8060005 [Sorghum bicolor] | 0 |
| TrEMBL | C5WN06 | RING-CH-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G113500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology