Basic Information
Locus ID:
gene-BS78_07G089100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 10549025 | 10549972 | - | gene-BS78_07G089100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 34,809.91 Da | 35.18 | 93.08 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 17 | 139 | 8.11671E-22 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 166 | 278 | 1.5E-24 | IPR000210 |
| Pfam | PF00917 | MATH domain | 32 | 140 | 7.9E-7 | IPR002083 |
| SUPERFAMILY | SSF54695 | POZ domain | 157 | 279 | 8.24E-26 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 24 | 143 | 2.13E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 17 | 141 | 1.4E-21 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 142 | 310 | 3.9E-43 | IPR011333 |
| SMART | SM00225 | BTB_4 | 174 | 279 | 8.8E-20 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 174 | 240 | 17.872293 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 14 | 138 | 19.368162 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_039771080.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum virgatum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835DY88 | Speckle-type POZ protein-like protein OS=Digitaria exilis OX=1010633 GN=HU200_061165 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_07G089100, gene-BS78_07G089500, gene-BS78_K171500 |