Basic Information
Locus ID:
gene-BS78_07G087900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 10339622 | 10340696 | - | gene-BS78_07G087900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 35,674.56 Da | 39.42 | 76.70 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 17 | 133 | 3.7514E-22 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 149 | 249 | 4.8E-22 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 13 | 138 | 1.8E-26 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 152 | 248 | 7.85E-23 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 15 | 138 | 7.7E-24 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 250 | 317 | 2.4E-18 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 146 | 249 | 2.2E-25 | IPR011333 |
| SMART | SM00225 | BTB_4 | 143 | 250 | 4.5E-19 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 143 | 210 | 14.211579 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 16 | 134 | 17.501589 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_025822263.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum hallii] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0RCB6 | Speckle-type POZ protein-like protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG184030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology