Basic Information
Locus ID:
gene-BS78_07G087300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 10200392 | 10203990 | - | gene-BS78_07G087300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 46,857.24 Da | 47.03 | 81.51 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 16 | 145 | 4.86055E-10 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 188 | 298 | 1.9E-23 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 14 | 159 | 1.42E-16 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 172 | 298 | 5.1E-28 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 174 | 296 | 1.4E-32 | IPR011333 |
| Gene3D | G3DSA:6.10.250.3030 | - | 297 | 360 | 2.2E-11 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 15 | 157 | 6.0E-16 | IPR008974 |
| SMART | SM00225 | BTB_4 | 194 | 301 | 7.6E-23 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 15 | 153 | 13.691732 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 194 | 263 | 16.962286 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 358 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.5 | - | 0 |
| RefSeq | XP_021321527.1 | BTB/POZ and MATH domain-containing protein 1 [Sorghum bicolor] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PUX5 | Speckle-type POZ protein-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS31293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G087300 |
| Poaceae | Zea mays | 1 | Zm00001eb414110_P001 |