Basic Information
Locus ID:
gene-BS78_07G082600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 9388538 | 9389626 | + | gene-BS78_07G082600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 26,079.93 Da | 53.09 | 66.56 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 125 | 229 | 9.3E-15 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 75 | 1.31E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 108 | 8.6E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 21 | 67 | 8.517177 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56250.1 | phloem protein 2-B14. | 0 |
| RefSeq | XP_025819896.1 | F-box protein PP2-B11-like [Panicum hallii] | 0 |
| Q9C7K0 | F-box protein VBF OS=Arabidopsis thaliana OX=3702 GN=VBF PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3I056 | F-box domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_6G033300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology