Basic Information
Locus ID:
gene-BS78_07G078900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 8829340 | 8834544 | + | gene-BS78_07G078900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 73,847.82 Da | 43.75 | 87.96 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 290 | 320 | 2.36973E-9 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 396 | 661 | 1.4E-47 | IPR001245 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 27 | 78 | 2.0E-9 | IPR025287 |
| Pfam | PF07645 | Calcium-binding EGF domain | 290 | 322 | 1.6E-7 | IPR001881 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 290 | 322 | 5.45E-8 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 398 | 663 | 1.35E-71 | IPR011009 |
| Gene3D | G3DSA:2.90.20.10 | Plasmodium vivax P25 domain | 186 | 331 | 5.1E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 396 | 475 | 1.6E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 476 | 666 | 1.9E-55 | - |
| SMART | SM00179 | egfca_6 | 290 | 330 | 1.2E-8 | IPR001881 |
| SMART | SM00181 | egf_5 | 242 | 289 | 17.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 396 | 664 | 2.3E-36 | IPR000719 |
| SMART | SM00181 | egf_5 | 293 | 330 | 0.054 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 396 | 664 | 38.138493 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 290 | 325 | 9.907964 | IPR000742 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 402 | 426 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 290 | 313 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 516 | 528 | - | IPR008271 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 304 | 315 | - | IPR000152 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_039839261.1 | wall-associated receptor kinase 2-like [Panicum virgatum] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A811QZW4 | Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS47669 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology