Basic Information
Locus ID:
gene-BS78_07G078400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 8674102 | 8678058 | - | gene-BS78_07G078400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 61,272.31 Da | 44.29 | 80.45 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 33 | 68 | 5.0E-5 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 154 | 451 | 8.89E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 85 | 1.01E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 79 | 1.8E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 126 | 250 | 1.7E-7 | IPR032675 |
| SMART | SM00256 | fbox_2 | 36 | 75 | 0.0018 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38390.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_002445197.1 | uncharacterized protein LOC8071159 isoform X2 [Sorghum bicolor] | 0 |
| Q9FF23 | Putative F-box protein At5g38390 OS=Arabidopsis thaliana OX=3702 GN=At5g38390 PE=4 SV=1 | 0 | |
| TrEMBL | A0A811PUR4 | F-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS31233 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology