Basic Information
Locus ID:
gene-BS78_07G078200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 8656084 | 8659867 | - | gene-BS78_07G078200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 73,055.74 Da | 43.47 | 79.01 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 151 | 188 | 8.2E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 140 | 195 | 1.7E-12 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 287 | 561 | 1.56E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 264 | 366 | 5.0E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 143 | 191 | 1.3E-6 | - |
| SMART | SM00256 | fbox_2 | 154 | 193 | 3.8E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 148 | 184 | 9.364997 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 148 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38392.1 | - | 0 |
| RefSeq | XP_039853295.1 | uncharacterized protein LOC120711732 [Panicum virgatum] | 0 |
| Q9ZV94 | Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana OX=3702 GN=At1g78760 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T0RAK6 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG094800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology