Basic Information
Locus ID:
gene-BS78_07G072800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7582450 | 7584165 | - | gene-BS78_07G072800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 53,115.98 Da | 48.37 | 82.37 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 55 | 1.9E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 275 | 444 | 5.1E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 71 | 6.28E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 252 | 458 | 4.8E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 61 | 8.5E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 56 | 9.497469 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 146 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002443737.1 | uncharacterized protein LOC8068547 [Sorghum bicolor] | 0 |
| TrEMBL | A0A1B6PF30 | F-box domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3007G011500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH08.96, BH08.43 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_07G013400, gene-BS78_07G014400 ... |