Basic Information
Locus ID:
gene-BS78_07G066000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6781101 | 6790396 | + | gene-BS78_07G066000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 177,031.66 Da | 47.80 | 97.89 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 18 | 301 | 1.3E-50 | IPR000719 |
| Pfam | PF00931 | NB-ARC domain | 380 | 623 | 5.8E-33 | IPR002182 |
| Pfam | PF13855 | Leucine rich repeat | 864 | 905 | 1.1E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 921 | 1241 | 1.5E-21 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1317 | 1504 | 6.98E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 301 | 4.51E-67 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 368 | 637 | 2.98E-48 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 742 | 1015 | 4.25E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1054 | 1256 | 2.9E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1297 | 1528 | 2.4E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 715 | 811 | 1.4E-5 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 362 | 528 | 4.9E-29 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 618 | 714 | 2.4E-8 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 812 | 1030 | 6.5E-37 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 111 | 322 | 9.7E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 90 | 3.8E-25 | - |
| SMART | SM00220 | serkin_6 | 18 | 306 | 1.4E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 18 | 304 | 36.004257 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 24 | 47 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 154 | 166 | - | IPR008271 |
| PRINTS | PR00364 | Disease resistance protein signature | 570 | 584 | 5.4E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 400 | 415 | 5.4E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 976 | 992 | 5.4E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 472 | 486 | 5.4E-14 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38830.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 26. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_008670938.1 | uncharacterized protein LOC103648229 isoform X1 [Zea mays] | 0 |
| Q7XA42 | Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0PRM2 | NB-ARC domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG367600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology