Basic Information
Locus ID:
gene-BS78_07G064500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6577659 | 6585016 | + | gene-BS78_07G064500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 112,260.82 Da | 46.33 | 78.47 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 831 | 970 | 3.70719E-50 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 271 | 627 | 2.58903E-78 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 859 | 960 | 5.7E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 743 | 779 | 4.4E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 283 | 704 | 5.5E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 257 | 627 | 2.47E-45 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 734 | 787 | 1.3E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 637 | 1017 | 1.81E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 643 | 1018 | 1.3E-63 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 734 | 794 | 7.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 396 | 488 | 2.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 499 | 642 | 3.1E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 243 | 333 | 6.0E-12 | IPR038718 |
| SMART | SM00490 | helicmild6 | 877 | 960 | 2.4E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 267 | 608 | 1.6E-26 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 841 | 1013 | 13.865045 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 416 | 589 | 11.923748 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 743 | 782 | 11.102496 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 758 | 767 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 153 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_004957553.1 | helicase-like transcription factor CHR28 isoform X1 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368Q4H2 | Helicase-like transcription factor CHR28 OS=Setaria italica OX=4555 GN=SETIT_2G297900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology