Basic Information
Locus ID:
gene-BS78_07G062300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6281065 | 6281886 | - | gene-BS78_07G062300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 30,127.64 Da | 54.19 | 80.88 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 223 | 264 | 2.0E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 268 | 5.01E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 210 | 271 | 1.1E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 224 | 264 | 10.291081 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 51 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035819143.1 | uncharacterized protein LOC103642511 [Zea mays] | 0 |
| TrEMBL | A0A8T0QV65 | RING-type domain-containing protein (Fragment) OS=Panicum virgatum OX=38727 GN=PVAP13_6NG074400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology