Basic Information
Locus ID:
gene-BS78_07G061700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6233271 | 6239579 | + | gene-BS78_07G061700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 69,462.35 Da | 43.76 | 95.51 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 308 | 579 | 1.4E-44 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 71 | 1.8E-10 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 147 | 166 | 1.7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 172 | 188 | 1.6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 206 | 1.59E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 286 | 582 | 4.72E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 384 | 601 | 1.9E-70 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 276 | 383 | 9.1E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 217 | 5.3E-64 | IPR032675 |
| SMART | SM00220 | serkin_6 | 307 | 581 | 4.0E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 307 | 594 | 36.612019 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 430 | 442 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 313 | 335 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_039853021.1 | LRR receptor kinase BAK1 [Panicum virgatum] | 0 |
| B8BB68 | LRR receptor kinase BAK1 OS=Oryza sativa subsp. indica OX=39946 GN=BAK1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0R7X0 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG076000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology