Basic Information
Locus ID:
gene-BS78_07G037900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 3656740 | 3662765 | - | gene-BS78_07G037900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 125,625.42 Da | 55.97 | 70.43 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 93 | 170 | 2.5E-6 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 214 | 272 | 5.8E-6 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 363 | 427 | 2.1E-10 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 493 | 1139 | 1.9E-39 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 336 | 427 | 5.89E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 172 | 2.71E-9 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 492 | 1141 | 2.55E-66 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 271 | 2.71E-8 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 478 | 707 | 3.3E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 180 | 2.2E-10 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 869 | 1144 | 2.4E-38 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 439 | 4.6E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 279 | 2.2E-9 | IPR013083 |
| SMART | SM00290 | Zf_UBP_1 | 213 | 261 | 1.3 | IPR001607 |
| SMART | SM00290 | Zf_UBP_1 | 362 | 420 | 0.015 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 212 | 273 | 13.371141 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 361 | 432 | 12.957155 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 91 | 171 | 10.674641 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 492 | 1142 | 36.02623 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 1073 | 1091 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1021 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_025822717.1 | ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 [Panicum hallii] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T8IHU9 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum hallii OX=206008 GN=PAHAL_6G274600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology