Basic Information
Locus ID:
gene-BS78_07G032000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 3044035 | 3050389 | + | gene-BS78_07G032000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 66,571.62 Da | 43.93 | 84.61 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 264 | 556 | 8.91274E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 385 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 344 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 513 | 0.0095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 298 | 2.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 556 | 1.88E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 577 | 2.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 256 | 520 | 2.8E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 8.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 3.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 5.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 81.0 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 151 | 0.001 | IPR006595 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.015 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 301 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 556 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 99 | 151 | 9.931948 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 7.887668 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 556 | 11.681953 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_025820751.1 | WD repeat-containing protein 26 homolog [Panicum hallii] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7D304 | WD repeat-containing protein 26 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G023500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology