Basic Information
Locus ID:
gene-BS78_07G020900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2100029 | 2103807 | + | gene-BS78_07G020900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 73,420.64 Da | 40.39 | 93.67 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 428 | 689 | 1.54579E-89 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 427 | 689 | 1.4E-34 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 153 | 213 | 5.6E-10 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 78 | 3.1E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 248 | 3.02E-45 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 405 | 689 | 2.31E-51 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 384 | 500 | 2.6E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 502 | 693 | 1.1E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 151 | 272 | 1.6E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 150 | 1.0E-25 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 152 | 176 | 7.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 200 | 224 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 104 | 128 | 22.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 422 | 693 | 27.170507 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51560.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_025821391.1 | probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Panicum hallii] | 0 |
| C0LGN2 | Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana OX=3702 GN=LRR-RLK PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PQM2 | Somatic embryogenesis receptor kinase 5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM14G01240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology