Basic Information
Locus ID:
gene-BS78_07G014500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1440929 | 1447199 | - | gene-BS78_07G014500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 54,559.94 Da | 48.51 | 90.08 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 50 | 3.8E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 65 | 1.09E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 185 | 392 | 7.32E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 55 | 2.2E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 171 | 465 | 2.5E-8 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 66 | 11.299088 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002443737.1 | uncharacterized protein LOC8068547 [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9W8N3 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_10224 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH08.96, BH08.43 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_07G013400, gene-BS78_07G014400 ... |