Basic Information
Locus ID:
gene-BS78_07G013400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1359129 | 1360884 | + | gene-BS78_07G013400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 57,352.85 Da | 51.71 | 91.51 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 19 | 53 | 6.2E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 77 | 1.31E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 192 | 459 | 2.43E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 170 | 471 | 5.5E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 60 | 1.1E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 64 | 8.702637 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002443737.1 | uncharacterized protein LOC8068547 [Sorghum bicolor] | 0 |
| TrEMBL | A0A1B6PF30 | F-box domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3007G011500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH08.96, BH08.43 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_07G013400, gene-BS78_07G014400 ... |