Basic Information
Locus ID:
gene-BS78_07G007600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
RCE1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 814464 | 817025 | + | gene-BS78_07G007600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 22,211.29 Da | 35.43 | 80.40 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 49 | 183 | 1.43018E-41 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 49 | 184 | 5.2E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 33 | 190 | 4.43E-49 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 41 | 199 | 9.4E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 48 | 190 | 3.4E-37 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 45 | 190 | 39.141445 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 117 | 132 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18600.1 | Ubiquitin-conjugating enzyme family protein. | 0 |
| RefSeq | XP_004973337.1 | NEDD8-conjugating enzyme Ubc12 [Setaria italica] | 0 |
| Q9ZU75 | Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana OX=3702 GN=RCE2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835AFA8 | UBC core domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_058720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22841 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21627 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010286, Ah029202 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24195, Sbi_jg8032 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12005 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010784 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66250, Sgl70567 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000013587, gene:ENSEOMG00000014161 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0014580, CQ.Regalona.r1.3AG0014590 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30113910, pistato.v30207390 |
| Apiaceae | Apium graveolens | 6 | Ag11G03110, Ag2G00293, Ag2G01142, Ag3G00181, Ag4G02768 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010860, COCNU_13G000420 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703800, gene-LOC103711578, gene-LOC120103752 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.495.V1.1, AsparagusV1_09.513.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G12450, Ftri18G28018, Ftri1G11152 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G18600.1, AT4G36800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022872m.g.v1.0, Thhalv10027340m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g32100.v2.2, Sp7g34460.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g088210.2N, BniB03g013990.2N, BniB05g002020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0062 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0740, Cgl09G0074 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g04270, gene.Cymno11g10650 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0035s00037.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g05160, gene.Thate07g06570 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2276, evm.TU.LG08.99 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002417, Pov_00026760 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10831, Lb2G13422, Lb3G17237 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3428, AH08.1447, CH04.405, CH08.1422 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0524430, gene-QOZ80_6BG0477960 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0473470.1, HORVU.MOREX.r3.6HG0541400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004526, gene-QYE76_016909 |
| Poaceae | Oryza coarctata | 3 | Oco09G000670, Oco15G007170, Oco16G006960 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g28680.1, LOC_Os09g15320.2, LOC_Os10g11260.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_06G003800, gene-BS78_07G007600, gene-BS78_K326500 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203291, Pt_Chr0501832, Pt_Chr0501893 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr10G004690, Chr14G007790, Chr16G013380, Chr17G012680 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G309700, Tel6E01G056500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG029730, gene_TRIDC5BG031360 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G182800.1, TraesCS5B02G180900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb226900_P001, Zm00001eb272930_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31702, nbis-gene-52259 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22900, Zma_g23988, Zma_g31978 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.395, evm.TU.LG08.1829, evm.TU.LG09.1638 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g25790, gene.Posoc08g05220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.255, evm.TU.Scaffold_6_RagTag.1977 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17155, nbisL1-mrna-351, nbisL1-mrna-517 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20790, nbisL1-mrna-21173 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11820, nbisL1-mrna-5990 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1199, evm.TU.utg000019l.1088 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008249, Maker00012788 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15569, nbisL1-mrna-6492 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2322, nbisL1-mrna-3124 |
| Salicaceae | Populus euphratica | 2 | populus_peu23524, populus_peu36447 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132604120, gene-LOC132604951, gene-LOC132604953 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002174400, SOLCI006501800, SOLCI006835600 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107005360, gene-LOC107010475, gene-LOC107018140 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11406_chr02_+, STRG.31603_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2282, TC10G0508 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00440.v3.1 |