Basic Information
Locus ID:
gene-BS78_06G295000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 42574208 | 42578300 | + | gene-BS78_06G295000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 53,441.92 Da | 63.44 | 74.13 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 231 | 273 | 3.00066E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 8 | 160 | 5.73468E-49 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 230 | 273 | 1.8E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 78 | 139 | 3.4E-9 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 79 | 144 | 3.66E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 278 | 2.25E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 278 | 7.2E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 17 | 153 | 4.6E-25 | - |
| SMART | SM00184 | ring_2 | 231 | 272 | 1.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 231 | 273 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 343 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_025823053.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X2 [Panicum hallii] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0QAX2 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7NG416200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology