Basic Information
Locus ID:
gene-BS78_06G284400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 41853064 | 41857522 | + | gene-BS78_06G284400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 87,754.17 Da | 57.79 | 64.94 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 508 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 430 | 466 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 349 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 605 | 642 | 0.015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 312 | 655 | 1.63E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 410 | 684 | 7.6E-49 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 274 | 370 | 3.7E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 602 | 643 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 466 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 311 | 350 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 549 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 508 | 3.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 601 | 71.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 435 | 469 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 475 | 510 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 318 | 355 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 475 | 510 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 318 | 359 | 14.752563 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 435 | 475 | 14.78598 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 337 | 351 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 453 | 467 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 453 | 467 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 337 | 351 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 495 | 509 | 1.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 281 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004960064.1 | WD repeat-containing protein 44 [Setaria italica] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | K3Z3Z1 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101765364 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology