Basic Information
Locus ID:
gene-BS78_06G267800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 40726172 | 40727496 | + | gene-BS78_06G267800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 37,361.83 Da | 49.53 | 70.36 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 20 | 149 | 1.32676E-24 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 183 | 294 | 1.4E-12 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 176 | 326 | 1.7E-16 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 17 | 154 | 2.62E-28 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 153 | 328 | 2.4E-30 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 18 | 152 | 3.0E-25 | IPR008974 |
| SMART | SM00225 | BTB_4 | 188 | 298 | 6.7E-11 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 188 | 261 | 12.515656 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 19 | 148 | 19.572718 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039772138.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0QQJ2 | BTB/POZ domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG430100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300840, gene-QOZ80_4BG0331550 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0199930.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_047063, gene-QYE76_055297, gene-QYE76_060667 ... |
| Poaceae | Oryza coarctata | 2 | Oco07G018090, Oco08G017470 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G267800 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G016540, Chr23G001910, Chr26G017400 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G823800, Tel2E01G845000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG070360, gene_TRIDC2BG076060 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G500000.1.cds1, TraesCS2B02G513200.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-24472, nbis-gene-6092 |