Basic Information
Locus ID:
gene-BS78_06G266700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 40667743 | 40668516 | - | gene-BS78_06G266700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 26,355.03 Da | 60.89 | 88.56 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 115 | 158 | 3.48682E-16 | - |
| Pfam | PF13639 | Ring finger domain | 115 | 158 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 162 | 2.78E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 162 | 9.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 116 | 157 | 8.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 116 | 158 | 12.164712 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 189 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025825486.1 | RING-H2 finger protein ATL43-like [Panicum hallii] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T8IE58 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_7G322300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300940, gene-QOZ80_4BG0331670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202420.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007947, gene-QYE76_047050 |
| Poaceae | Oryza coarctata | 1 | Oco07G018010 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G266700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G001990, Chr26G017330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G847500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G501100.1.cds1, TraesCS2B02G529100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb432540_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6081 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22135 |