Basic Information
Locus ID:
gene-BS78_06G247800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 39299953 | 39303100 | + | gene-BS78_06G247800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 76,778.05 Da | 53.68 | 82.51 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 279 | 543 | 1.7E-91 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 90 | 181 | 7.2E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 82 | 182 | 5.73E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 84 | 201 | 3.3E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 91 | 189 | 4.3E-5 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 91 | 165 | 11.274735 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 279 | 567 | 92.640572 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 704 | - | - |
| Coils | Coil | Coil | 631 | 651 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_025825444.1 | BTB/POZ domain-containing protein At5g03250-like [Panicum hallii] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7D0U2 | BTB/POZ domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G299900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology