Basic Information
Locus ID:
gene-BS78_06G239800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38752161 | 38757513 | - | gene-BS78_06G239800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 116,212.32 Da | 52.94 | 79.34 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 852 | 995 | 2.58216E-47 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 241 | 645 | 1.09855E-74 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 253 | 722 | 3.0E-66 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 889 | 985 | 1.7E-13 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 764 | 816 | 3.33E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 228 | 645 | 2.16E-41 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 653 | 1042 | 8.94E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 211 | 372 | 2.8E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 660 | 1042 | 1.7E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 423 | 658 | 1.0E-40 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 754 | 816 | 2.6E-9 | IPR013083 |
| SMART | SM00487 | ultradead3 | 237 | 624 | 2.4E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 902 | 985 | 6.4E-16 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 439 | 607 | 13.143503 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 761 | 801 | 10.468117 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 881 | 1038 | 13.979571 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 780 | 789 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 434 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021319064.1 | helicase-like transcription factor CHR28 [Sorghum bicolor] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811QTJ2 | Helicase ATP-binding domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS42922 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology