Basic Information
Locus ID:
gene-BS78_06G239700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38745560 | 38750230 | - | gene-BS78_06G239700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 66,519.27 Da | 38.51 | 90.27 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 61 | 255 | 1.23081E-73 | - |
| CDD | cd18793 | SF2_C_SNF | 451 | 582 | 3.62465E-60 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 375 | 401 | 6.3E-5 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 461 | 571 | 2.1E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 54 | 339 | 7.2E-55 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 374 | 403 | 5.74E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 59 | 255 | 4.56E-33 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 271 | 593 | 6.24E-52 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 362 | 412 | 5.1E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 39 | 256 | 5.3E-42 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 278 | 594 | 1.3E-63 | IPR027417 |
| SMART | SM00487 | ultradead3 | 6 | 222 | 3.3E-7 | IPR014001 |
| SMART | SM00490 | helicmild6 | 488 | 571 | 2.7E-19 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 61 | 217 | 13.646496 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 375 | 399 | 8.742016 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 465 | 594 | 13.396981 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 390 | 399 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 53 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021319327.1 | helicase-like transcription factor CHR28 [Sorghum bicolor] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | C5YGK0 | Helicase C-terminal domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G225700 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology