Basic Information
Locus ID:
gene-BS78_06G235700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38451021 | 38452091 | + | gene-BS78_06G235700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 38,331.51 Da | 28.33 | 91.83 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 32 | 150 | 7.08978E-19 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 175 | 287 | 6.84825E-47 | - |
| Pfam | PF00917 | MATH domain | 38 | 134 | 1.4E-5 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 180 | 289 | 1.7E-26 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 166 | 288 | 9.03E-33 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 28 | 162 | 6.21E-24 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 28 | 157 | 1.3E-20 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 289 | 354 | 3.3E-18 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 163 | 285 | 1.1E-36 | IPR011333 |
| SMART | SM00225 | BTB_4 | 187 | 290 | 1.2E-23 | IPR000210 |
| SMART | SM00061 | math_3 | 34 | 135 | 1.2E-4 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 187 | 250 | 17.665474 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 29 | 150 | 13.794011 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_039775585.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811QUJ6 | Speckle-type POZ protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS45558 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology