Basic Information
Locus ID:
gene-BS78_06G235600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38444254 | 38446393 | + | gene-BS78_06G235600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 38,889.30 Da | 22.09 | 85.26 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 29 | 146 | 6.68996E-23 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 175 | 283 | 4.9E-24 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 26 | 157 | 6.38E-28 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 165 | 283 | 1.17E-29 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 159 | 279 | 1.1E-35 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 26 | 152 | 1.1E-23 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 284 | 350 | 2.4E-21 | - |
| SMART | SM00061 | math_3 | 29 | 131 | 5.0E-4 | IPR002083 |
| SMART | SM00225 | BTB_4 | 183 | 285 | 4.2E-20 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 27 | 148 | 17.527157 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 183 | 244 | 15.907503 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_039818772.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0QDS6 | BTB/POZ and MATH domain-containing protein 1 OS=Panicum virgatum OX=38727 GN=PVAP13_7NG363600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology