Basic Information
Locus ID:
gene-BS78_06G235500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38441202 | 38442266 | + | gene-BS78_06G235500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 39,018.39 Da | 30.01 | 89.21 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 31 | 147 | 4.82974E-21 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 173 | 284 | 3.0E-25 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 163 | 284 | 9.22E-32 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 28 | 156 | 1.8E-23 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 285 | 354 | 3.6E-19 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 28 | 150 | 5.8E-20 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 157 | 280 | 6.3E-37 | IPR011333 |
| SMART | SM00225 | BTB_4 | 181 | 286 | 9.4E-24 | IPR000210 |
| SMART | SM00061 | math_3 | 34 | 129 | 0.0073 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 29 | 146 | 13.30819 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 181 | 248 | 17.975704 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_039818772.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6QCP1 | BTB/POZ and MATH domain-containing protein 2-like OS=Panicum miliaceum OX=4540 GN=C2845_PM15G22660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology