Basic Information
Locus ID:
gene-BS78_06G235200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38420892 | 38422272 | - | gene-BS78_06G235200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 29,321.38 Da | 39.36 | 88.81 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 87 | 200 | 7.7E-22 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 74 | 201 | 7.85E-29 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 5 | 67 | 1.7E-5 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 202 | 268 | 1.7E-20 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 71 | 196 | 2.2E-30 | IPR011333 |
| SMART | SM00225 | BTB_4 | 94 | 202 | 5.7E-20 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 94 | 164 | 17.768883 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_039772116.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0QNF7 | BTB/POZ and MATH domain-containing protein 2 OS=Panicum virgatum OX=38727 GN=PVAP13_7KG394000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology