Basic Information
Locus ID:
gene-BS78_06G215200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 36860921 | 36863876 | + | gene-BS78_06G215200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 52,169.19 Da | 50.08 | 74.82 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 175 | 447 | 7.58439E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 362 | 0.0069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 308 | 6.1E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 181 | 249 | 2.3E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 412 | 447 | 5.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 146 | 449 | 1.65E-58 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 101 | 450 | 3.8E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 320 | 362 | 3.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 224 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 405 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 447 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 308 | 1.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 265 | 1.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 233 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 415 | 448 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 317 | 14.752563 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 415 | 448 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 276 | 308 | 11.365591 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 434 | 448 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_025824481.1 | cell division cycle 20.2, cofactor of APC complex-like [Panicum hallii] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835B1Y1 | ANAPC4_WD40 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_050763 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology