Basic Information
Locus ID:
gene-BS78_06G209600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 36498547 | 36502946 | - | gene-BS78_06G209600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 41,149.51 Da | 62.43 | 62.21 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 165 | 208 | 1.87483E-18 | - |
| Pfam | PF13639 | Ring finger domain | 165 | 208 | 2.3E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 214 | 2.32E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 214 | 5.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 207 | 5.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 208 | 12.961374 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 394 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004976649.1 | E3 ubiquitin-protein ligase Os04g0590900 [Setaria italica] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | K3Y7V6 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101755077 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology