Basic Information
Locus ID:
gene-BS78_06G208100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
UBA-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 36381628 | 36383109 | + | gene-BS78_06G208100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 53,473.56 Da | 52.24 | 57.47 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02958 | UAS | 171 | 291 | 3.66183E-31 | - |
| Pfam | PF00789 | UBX domain | 408 | 487 | 8.8E-5 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 399 | 492 | 3.88E-10 | IPR029071 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 153 | 294 | 8.2E-24 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 173 | 295 | 1.5E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 303 | 490 | 7.9E-8 | - |
| SMART | SM00594 | 45neu3 | 159 | 289 | 1.2E-5 | IPR006577 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 27 | 6.0 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 407 | 490 | 14.549576 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 108 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14570.3 | UBX domain-containing protein. | 0 |
| RefSeq | XP_021315286.1 | putative plant UBX domain-containing protein 14 [Sorghum bicolor] | 0 |
| Q94JZ8 | Plant UBX domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUX7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811P9P5 | UBX domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS28522 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.861, AH07.2773, BH03.985, BH07.2584, CH07.2650 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0138910, gene-QOZ80_2BG0194560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0117420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007415, gene-QYE76_023963, gene-QYE76_023966 ... |
| Poaceae | Oryza coarctata | 3 | Oco04G017190, Oco13G005150, Oco14G006110 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G208100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G013060, Chr09G024940, Chr09G024970, Chr15G015460 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG020080, gene_TRIDC6AG036470 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G133200.1.cds1, TraesCS2B02G156700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb185740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27667, nbis-gene-9357 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13983 |